Looking for a quick, protein-packed snack or breakfast that satisfies your cravings? These high-protein bagel bites are chewy on the outside, creamy on the inside, and ready in just 16 minutes. Perfect for busy mornings, meal prep, or on-the-go snacks, these gluten-free bites combine convenience with delicious flavor.
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Ingredients
- ⅔ cup gluten-free all-purpose flour
- 1 tsp baking powder
- 1 scoop (30g) unflavored protein powder
- Pinch of salt
- ⅔ cup plain unsweetened Greek yogurt
- 10 tsp cream cheese (about 1 tsp per bite)
- 1 egg, lightly beaten (optional, for egg wash)
- Everything But The Bagel seasoning, for topping
Instructions for High-Protein Bagel Bites
- Preheat your air fryer to 350°F (175°C).
- Combine dry ingredients – mix gluten-free flour, protein powder, baking powder, and salt in a bowl.
- Add Greek yogurt and stir until a sticky dough forms. Switch to hands for easier mixing if needed.
- Divide dough into 10 equal portions, rolling each into a smooth ball.
- Add cream cheese filling – flatten each dough ball, place 1 tsp cream cheese in the center, and seal by rolling it back into a ball.
- Optional egg wash – brush with beaten egg or lightly spray with oil.
- Top with seasoning – sprinkle Everything But The Bagel generously over each bite.
- Arrange in air fryer basket with space between each bite.
- Air fry for 5–6 minutes until golden brown. Note: they continue cooking slightly after removal.
- Cool slightly and enjoy warm, gooey cream cheese centers.

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Pro Tips
- Use thick Greek yogurt for best texture.
- Ensure fresh baking powder for proper rise.
- For easy portioning, use a kitchen scale (≈30g per bite).
- Air fry in batches to prevent overcrowding.
Why This Recipe Works
- Gluten-free and protein-rich—perfect for healthy breakfasts.
- Quick, easy, and no yeast or rising required.
- Soft, chewy dough with a creamy, flavorful center.
- Ideal for meal prep and portable snacks.
Substitutions & Variations
- Dairy-free: Use coconut yogurt and vegan cream cheese.
- Regular flour: All-purpose flour works if gluten-free is not required.
- Flavor twists: Add cinnamon and raisins for sweet bites or fresh herbs for savory ones.
Make-Ahead, Storage & Reheating Guide
- Fridge: Airtight container for up to 4 days.
- Freezer: Freeze for up to 3 months; separate on a tray first to prevent sticking.
- Reheating: 15 seconds in microwave from fridge, or 4–5 minutes in air fryer from frozen at 325°F.
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Serving Ideas for High-Protein Bagel Bites
- Pair with a fresh fruit salad for a sweet and savory combo.
- Serve alongside a Greek yogurt parfait for extra protein.
- Enjoy with veggie sticks and hummus for a balanced snack.
- Combine with a protein smoothie for a complete on-the-go breakfast.
Nutrition (Per Serving Estimate)
- Calories: 95 kcal
- Protein: 8 g
- Fat: 3 g
- Saturated Fat: 1.5 g
- Carbohydrates: 7 g
- Fiber: 1 g
- Sugar: 1 g
- Sodium: 120 mg
- Cholesterol: 15 mg
Frequently Asked Questions
Can I bake these in the oven?
Yes! Bake at 375°F for 12–15 minutes. Watch closely as oven temperatures vary.
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Can I make them dairy-free?
Absolutely! Substitute Greek yogurt with coconut yogurt and use dairy-free cream cheese.
Can I use regular flour?
Yes, adjust slightly if dough feels sticky; start with ½ cup and add more as needed.
Why are my bagel bites soggy inside?
Likely undercooked or yogurt too wet. Strain Greek yogurt for 30 minutes or add an extra cooking minute.
Can I make different flavors?
Yes! Sweet (cinnamon + raisins) or savory (herbs + flavored cream cheese) variations work beautifully.
These high-protein bagel bites are a game-changer for anyone seeking a quick, delicious, and satisfying snack or breakfast. With simple ingredients, minimal prep, and maximum flavor, they’re perfect for busy mornings or meal prepping for the week. Once you try them, they’ll quickly become a staple in your kitchen.

High-Protein Bagel Bites
Equipment
- air fryer
- Mixing bowl
- measuring cups
- spoon
Ingredients
- 2/3 cup gluten-free all-purpose flour
- 1 tsp baking powder
- 1 scoop unflavored protein powder (about 30 g)
- pinch of salt
- 2/3 cup plain unsweetened Greek yogurt
- 10 tsp cream cheese
- 1 egg, lightly beaten (optional, for egg wash)
- Everything But The Bagel seasoning, for topping
Instructions
- Preheat the air fryer to 350°F (175°C).
- In a bowl, mix gluten-free flour, protein powder, baking powder, and salt.
- Add Greek yogurt and stir until a sticky dough forms. Use hands if needed.
- Divide dough into 10 equal portions and roll each into a ball.
- Flatten each dough ball, add 1 teaspoon cream cheese in the center, then seal and roll back into a ball.
- Brush with beaten egg if using, then sprinkle generously with Everything But The Bagel seasoning.
- Arrange bagel bites in the air fryer basket with space between each. Air fry for 5–6 minutes until golden brown.
- Let cool slightly before serving warm.
Notes
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